STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEI27693.1Carboxypeptidase C (cathepsin A). (554 aa)    
Predicted Functional Partners:
SEI27692.1
Kumamolisin. Serine peptidase. MEROPS family S53.
 
     0.598
SEH46864.1
Beta-galactosidase; Belongs to the glycosyl hydrolase 35 family.
  
 0.554
SEI22095.1
Ankyrin repeat.
    
 0.515
SEH63276.1
Beta-galactosidase.
   
 0.497
SEH63289.1
Glycosyl hydrolases family 35.
   
 0.497
SEI25643.1
Beta-galactosidase.
   
 0.497
SEI26953.1
Beta-galactosidase.
   
 0.497
SEI27694.1
Hypothetical protein.
       0.441
SEH59886.1
SMP-30/Gluconolaconase/LRE-like region-containing protein.
  
  
 0.422
SEI28243.1
WD-40 repeat-containing protein.
  
  
 0.413
Your Current Organism:
Paraburkholderia hospita
NCBI taxonomy Id: 169430
Other names: Burkholderia hospita, Burkholderia hospita Goris et al. 2003, Burkholderia sp. LMG 20598, CCUG 43658, CCUG 43661, CIP 107793, DSM 17164, LMG 20598, LMG:20598, P. hospita, Paraburkholderia hospita (Goris et al. 2003) Sawana et al. 2015, strain Goris R-8366, strain R-8366
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.