STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEI28243.1WD-40 repeat-containing protein. (656 aa)    
Predicted Functional Partners:
SEH80369.1
Hypothetical protein.
  
     0.774
SEH53391.1
Initiator Replication protein.
  
     0.771
SEH80393.1
Glycosyltransferase like family 2.
 
     0.763
SEI26542.1
Transglutaminase-like superfamily protein.
  
     0.761
SEI07960.1
Putative copper resistance protein D.
  
     0.760
SEH80275.1
Membrane protein involved in the export of O-antigen and teichoic acid.
 
     0.756
SEH80364.1
Glycosyltransferase involved in cell wall bisynthesis.
  
    0.747
SEI04434.1
Ribosomal protein S18 acetylase RimI.
  
 
 
 0.738
SEI28498.1
Outer membrane porin, OprD family.
  
     0.733
SEH80255.1
Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains.
  
   
 0.726
Your Current Organism:
Paraburkholderia hospita
NCBI taxonomy Id: 169430
Other names: Burkholderia hospita, Burkholderia hospita Goris et al. 2003, Burkholderia sp. LMG 20598, CCUG 43658, CCUG 43661, CIP 107793, DSM 17164, LMG 20598, LMG:20598, P. hospita, Paraburkholderia hospita (Goris et al. 2003) Sawana et al. 2015, strain Goris R-8366, strain R-8366
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.