STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ftsH_1ATP-dependent zinc metalloprotease FtsH. (710 aa)    
Predicted Functional Partners:
glpK_2
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate.
   
 0.995
htrA
Serine protease Do-like HtrA.
   
 0.994
alaS
Alanine--tRNA ligase.
    
  0.932
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
     
 0.929
CUP71587.1
Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases.
    
 0.915
CUP20543.1
Uncharacterised protein.
 
     0.871
ftsH3
ATP-dependent zinc metalloprotease FtsH 3.
  
 
0.833
CUP20689.1
Uncharacterised protein.
 
     0.815
CUP20735.1
Uncharacterized homolog of phage Mu protein gp47.
 
     0.812
CUP21152.1
Phage tail sheath protein.
     0.810
Your Current Organism:
Anaerotruncus colihominis
NCBI taxonomy Id: 169435
Other names: A. colihominis, Anaerotruncus colihominis Lawson et al. 2004, CCUG 45055, CIP 107754, DSM 17241, JCM 15631, Ruminococcus sp. 14565, WAL 14565
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