STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUP26140.1Uncharacterised protein. (224 aa)    
Predicted Functional Partners:
mdeA_1
Methionine gamma-lyase.
       0.697
CUP81624.1
Copper exporting ATPase.
  
     0.659
CUP57460.1
Uncharacterised protein.
  
     0.617
immR_5
HTH-type transcriptional regulator immR.
  
     0.617
CUP30557.1
Uncharacterised protein.
  
     0.592
CUP19136.1
Domain of uncharacterised function (DUF3794).
  
     0.591
CUP81174.1
Uncharacterised protein.
  
  
  0.479
CUP94253.1
Bacterial membrane flanked domain.
  
     0.470
CUP56471.1
SpoIIIAH-like protein.
  
     0.464
lytC_4
N-acetylmuramoyl-L-alanine amidase LytC precursor.
  
     0.459
Your Current Organism:
Anaerotruncus colihominis
NCBI taxonomy Id: 169435
Other names: A. colihominis, Anaerotruncus colihominis Lawson et al. 2004, CCUG 45055, CIP 107754, DSM 17241, JCM 15631, Ruminococcus sp. 14565, WAL 14565
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.