Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CUP30027.1 | dgkA | ERS852551_00360 | ERS852551_00362 | Uncharacterised protein. | Undecaprenol kinase. | 0.465 |
CUP30027.1 | era | ERS852551_00360 | ERS852551_00361 | Uncharacterised protein. | Bex protein; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.465 |
CUP30027.1 | mutS2 | ERS852551_00360 | ERS852551_00358 | Uncharacterised protein. | MutS2 protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. | 0.598 |
CUP30027.1 | recO | ERS852551_00360 | ERS852551_00359 | Uncharacterised protein. | Recombination protein O; Involved in DNA repair and RecF pathway recombination. | 0.773 |
CUP30027.1 | ybeY | ERS852551_00360 | ERS852551_00363 | Uncharacterised protein. | Probable rRNA maturation factor; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.465 |
CUP30027.1 | ybeZ | ERS852551_00360 | ERS852551_00364 | Uncharacterised protein. | PhoH-like protein. | 0.465 |
dgkA | CUP30027.1 | ERS852551_00362 | ERS852551_00360 | Undecaprenol kinase. | Uncharacterised protein. | 0.465 |
dgkA | era | ERS852551_00362 | ERS852551_00361 | Undecaprenol kinase. | Bex protein; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.902 |
dgkA | mutS2 | ERS852551_00362 | ERS852551_00358 | Undecaprenol kinase. | MutS2 protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. | 0.482 |
dgkA | recO | ERS852551_00362 | ERS852551_00359 | Undecaprenol kinase. | Recombination protein O; Involved in DNA repair and RecF pathway recombination. | 0.752 |
dgkA | ybeY | ERS852551_00362 | ERS852551_00363 | Undecaprenol kinase. | Probable rRNA maturation factor; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.967 |
dgkA | ybeZ | ERS852551_00362 | ERS852551_00364 | Undecaprenol kinase. | PhoH-like protein. | 0.860 |
dnaX_1 | polA_1 | ERS852551_00330 | ERS852551_01915 | DNA polymerase III subunit tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.543 |
dnaX_1 | recO | ERS852551_00330 | ERS852551_00359 | DNA polymerase III subunit tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | Recombination protein O; Involved in DNA repair and RecF pathway recombination. | 0.717 |
dnaX_1 | recR | ERS852551_00330 | ERS852551_00328 | DNA polymerase III subunit tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.959 |
era | CUP30027.1 | ERS852551_00361 | ERS852551_00360 | Bex protein; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Uncharacterised protein. | 0.465 |
era | dgkA | ERS852551_00361 | ERS852551_00362 | Bex protein; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Undecaprenol kinase. | 0.902 |
era | mutS2 | ERS852551_00361 | ERS852551_00358 | Bex protein; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | MutS2 protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. | 0.584 |
era | recF | ERS852551_00361 | ERS852551_02474 | Bex protein; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | DNA replication and repair protein recF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family. | 0.418 |
era | recO | ERS852551_00361 | ERS852551_00359 | Bex protein; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Recombination protein O; Involved in DNA repair and RecF pathway recombination. | 0.850 |
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