STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUP31847.1D-tagatose 3-epimerase. (294 aa)    
Predicted Functional Partners:
CUQ07382.1
Oxidoreductase family%2C NAD-binding Rossmann fold.
  
 
  0.814
livF_1
LIV-I protein F.
    
  0.721
CUP31762.1
Leucine/isoleucine/valine transporter permease subunit; Belongs to the binding-protein-dependent transport system permease family.
       0.697
lptB_1
Lipopolysaccharide export system ATP-binding protein LptB.
       0.697
ycjS_2
Uncharacterized oxidoreductase ycjS.
 
 
  0.691
livH_1
LIV-I protein H; Belongs to the binding-protein-dependent transport system permease family.
       0.683
ycjS_1
Uncharacterized oxidoreductase ycjS.
 
 
  0.605
crnA_2
Creatinine amidohydrolase.
 
 
  0.602
crnA_1
Creatinine amidohydrolase.
 
 
  0.589
gfo
Glucose--fructose oxidoreductase precursor.
 
 
  0.583
Your Current Organism:
Anaerotruncus colihominis
NCBI taxonomy Id: 169435
Other names: A. colihominis, Anaerotruncus colihominis Lawson et al. 2004, CCUG 45055, CIP 107754, DSM 17241, JCM 15631, Ruminococcus sp. 14565, WAL 14565
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