STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUP42414.1Cupin domain. (182 aa)    
Predicted Functional Partners:
acsA
Acetyl-coenzyme A synthetase.
 
 0.986
acs
Acetyl-coenzyme A synthetase.
 
 0.934
CUP20277.1
Acyl-CoA dehydrogenase%2C short-chain specific.
  
 
 0.806
yfaY
CinA-like protein; Belongs to the CinA family.
  
 
 0.737
ygaD
Competence damage-inducible protein A; Belongs to the CinA family.
  
 
 0.737
fadK
Short-chain-fatty-acid--CoA ligase.
  
 0.707
pta
Phosphate acetyltransferase.
   
 0.698
pheA
P-protein.
  
 
 0.690
CUP54571.1
Acyl-CoA dehydrogenase%2C short-chain specific.
   
 
  0.683
CUP83339.1
TDP-fucosamine acetyltransferase.
    
  0.676
Your Current Organism:
Anaerotruncus colihominis
NCBI taxonomy Id: 169435
Other names: A. colihominis, Anaerotruncus colihominis Lawson et al. 2004, CCUG 45055, CIP 107754, DSM 17241, JCM 15631, Ruminococcus sp. 14565, WAL 14565
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.