STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbsA_7Ribose import ATP-binding protein RbsA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family. (795 aa)    
Predicted Functional Partners:
alsB_1
D-allose-binding periplasmic protein precursor.
 
  0.721
rbsC_6
Ribose transport system permease protein rbsC; Belongs to the binding-protein-dependent transport system permease family.
 
 
0.673
galS
Mgl repressor and galactose ultrainduction factor.
  
 0.650
lsrB
Autoinducer 2-binding protein lsrB precursor.
  
  0.588
rbsD_1
D-ribose pyranase.
  
  
 0.568
mglC
Galactoside transport system permease protein mglC.
 
 
0.557
rbsC_9
Ribose transport system permease protein rbsC; Belongs to the binding-protein-dependent transport system permease family.
  
 
0.557
rbsC_8
Ribose transport system permease protein rbsC; Belongs to the binding-protein-dependent transport system permease family.
  
 
0.551
rbsC_2
Ribose transport system permease protein rbsC; Belongs to the binding-protein-dependent transport system permease family.
  
 
0.541
rbsC_4
Ribose transport system permease protein rbsC; Belongs to the binding-protein-dependent transport system permease family.
  
 
0.541
Your Current Organism:
Anaerotruncus colihominis
NCBI taxonomy Id: 169435
Other names: A. colihominis, Anaerotruncus colihominis Lawson et al. 2004, CCUG 45055, CIP 107754, DSM 17241, JCM 15631, Ruminococcus sp. 14565, WAL 14565
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