STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glkAGlucokinase. (318 aa)    
Predicted Functional Partners:
ptsG
EIICBA-Glc.
  
 0.980
neuC
Polysialic acid biosynthesis protein P7.
 
     0.911
pgiB
Glucose-6-phosphate isomerase B; Belongs to the GPI family.
 
 
 0.869
murB
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
     
 0.761
ycdX
Probable phosphatase YcdX.
       0.751
gmuF
Probable mannose-6-phosphate isomerase gmuF.
 
 
 0.742
pgcA
Phosphoglucomutase.
 
 
 0.736
hprK
HPr kinase/phosphorylase; Catalyzes the ATP- as well as the pyrophosphate-dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK/P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P-Ser-HPr). The two antagonistic activities of HprK/P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon [...]
     
 0.729
tal
Probable transaldolase.
  
 
 0.692
mro
Aldose 1-epimerase precursor; Converts alpha-aldose to the beta-anomer.
  
 
 0.686
Your Current Organism:
Anaerotruncus colihominis
NCBI taxonomy Id: 169435
Other names: A. colihominis, Anaerotruncus colihominis Lawson et al. 2004, CCUG 45055, CIP 107754, DSM 17241, JCM 15631, Ruminococcus sp. 14565, WAL 14565
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