STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUP49494.1Recombinase. (210 aa)    
Predicted Functional Partners:
CUP49520.1
Resolvase%2C N terminal domain.
     0.986
CUP73056.1
Resolvase%2C N terminal domain.
 
      0.877
CUP49469.1
Uncharacterised protein.
      0.715
CUP49559.1
Relaxase/Mobilisation nuclease domain.
 
     0.687
mgm
2-methyleneglutarate mutase.
  
     0.682
CUP82720.1
L-serine deaminase.
  
     0.679
CUP38947.1
Putative fructoselysine transporter.
  
     0.652
CUP69848.1
Uncharacterised protein.
  
     0.625
CUQ01485.1
Predicted transmembrane transcriptional regulator (anti-sigma factor).
  
     0.513
CUQ20905.1
Bacteriophage terminase large (ATPase) subunit and inactivated derivatives.
  
     0.509
Your Current Organism:
Anaerotruncus colihominis
NCBI taxonomy Id: 169435
Other names: A. colihominis, Anaerotruncus colihominis Lawson et al. 2004, CCUG 45055, CIP 107754, DSM 17241, JCM 15631, Ruminococcus sp. 14565, WAL 14565
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