STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUP56645.1Uncharacterized protein conserved in bacteria. (318 aa)    
Predicted Functional Partners:
CUP56621.1
Stage III sporulation protein SpoAB.
 
  
 0.998
CUP56606.1
Stage III sporulation protein AC.
 
  
 0.987
CUP56504.1
Stage III sporulation protein AG.
 
  
 0.985
CUP56578.1
Stage III sporulation protein AD.
 
  
 0.969
spoIIIAE
Stage III sporulation protein AE precursor.
 
  
 0.968
CUP56471.1
SpoIIIAH-like protein.
 
  
 0.966
spoIVA
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
  
 0.922
spoIIP
Stage II sporulation protein P.
  
   
 0.891
spoIIID
14 kDa transcription factor.
  
   
 0.890
CUP82196.1
Stage II sporulation protein R.
  
  
 0.871
Your Current Organism:
Anaerotruncus colihominis
NCBI taxonomy Id: 169435
Other names: A. colihominis, Anaerotruncus colihominis Lawson et al. 2004, CCUG 45055, CIP 107754, DSM 17241, JCM 15631, Ruminococcus sp. 14565, WAL 14565
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.