STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUP64971.1Uncharacterised protein. (154 aa)    
Predicted Functional Partners:
CUP64944.1
Protein of uncharacterised function (DUF3100).
 
     0.938
abgB_2
Aminobenzoyl-glutamate utilization protein B.
 
     0.899
CUP64876.1
D-threonine aldolase.
 
     0.627
ramA
(R)-stereoselective amidase.
 
     0.587
pheA
P-protein.
      
 0.538
CUP89386.1
Uncharacterised protein.
  
   
 0.470
nadX
L-aspartate dehydrogenase.
 
     0.451
CUP65044.1
Uncharacterized protein conserved in bacteria.
 
     0.448
CUP18293.1
Uncharacterised protein.
  
     0.439
yabJ
Enamine/imine deaminase.
       0.435
Your Current Organism:
Anaerotruncus colihominis
NCBI taxonomy Id: 169435
Other names: A. colihominis, Anaerotruncus colihominis Lawson et al. 2004, CCUG 45055, CIP 107754, DSM 17241, JCM 15631, Ruminococcus sp. 14565, WAL 14565
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.