STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pbpDPenicillin-binding protein 4 precursor. (751 aa)    
Predicted Functional Partners:
penA
Penicillin-binding protein 2.
 
0.963
divIVA
Minicell-associated protein DivIVA.
   
 
 0.932
pbpA_2
Penicillin-binding protein A.
 
 
 0.922
pbpA_1
Penicillin-binding protein A.
 
 
 0.904
dacC
D-alanyl-D-alanine carboxypeptidase dacC precursor; Belongs to the peptidase S11 family.
   
 
 0.812
CUP68011.1
D-alanyl-D-alanine carboxypeptidase.
     
 0.792
spoIIQ
Stage II sporulation protein Q.
  
   
 0.768
dacB_1
D-alanyl-D-alanine carboxypeptidase dacB precursor; Belongs to the peptidase S11 family.
   
 
 0.750
dacB_2
D-alanyl-D-alanine carboxypeptidase dacB precursor; Belongs to the peptidase S11 family.
   
 
 0.750
envC_3
Septal ring factor.
  
   
 0.736
Your Current Organism:
Anaerotruncus colihominis
NCBI taxonomy Id: 169435
Other names: A. colihominis, Anaerotruncus colihominis Lawson et al. 2004, CCUG 45055, CIP 107754, DSM 17241, JCM 15631, Ruminococcus sp. 14565, WAL 14565
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