STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUP80269.1Phage uncharacterized protein%2C XkdX family. (42 aa)    
Predicted Functional Partners:
CUP80247.1
Uncharacterised protein.
       0.727
CUP80294.1
Uncharacterised protein.
       0.615
CUP80223.1
Uncharacterised protein.
       0.464
CUP80106.1
Phage protein D.
       0.445
CUP80123.1
Protein of uncharacterised function (DUF2577).
       0.445
CUP80145.1
Protein of uncharacterised function (DUF2634).
       0.445
CUP80164.1
Uncharacterized homolog of phage Mu protein gp47.
       0.445
CUP80178.1
Uncharacterized protein conserved in bacteria (DUF2313).
       0.445
CUP80202.1
Uncharacterised protein.
       0.445
CUP80064.1
Tape measure domain.
       0.432
Your Current Organism:
Anaerotruncus colihominis
NCBI taxonomy Id: 169435
Other names: A. colihominis, Anaerotruncus colihominis Lawson et al. 2004, CCUG 45055, CIP 107754, DSM 17241, JCM 15631, Ruminococcus sp. 14565, WAL 14565
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.