STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mobA_1DNA strand transferase. (529 aa)    
Predicted Functional Partners:
dnaG_2
DNA primase.
 
 
  0.750
CUP86295.1
Predicted P-loop ATPase and inactivated derivatives.
 
     0.707
CUP86430.1
Uncharacterised protein.
 
     0.616
tnpX
Resolvase%2C N terminal domain.
 
     0.597
CUQ20308.1
Resolvase%2C N terminal domain.
  
     0.565
CUQ13053.1
Type IV secretory pathway%2C VirD4 components.
  
     0.553
CUQ13118.1
Protein of uncharacterised function (DUF3847).
 
     0.532
addA
ATP-dependent helicase/nuclease subunit A; ATP-dependent DNA helicase.
  
 
 0.518
CUQ27126.1
Uncharacterised protein.
  
     0.511
CUQ13206.1
Recombinase.
  
     0.510
Your Current Organism:
Anaerotruncus colihominis
NCBI taxonomy Id: 169435
Other names: A. colihominis, Anaerotruncus colihominis Lawson et al. 2004, CCUG 45055, CIP 107754, DSM 17241, JCM 15631, Ruminococcus sp. 14565, WAL 14565
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