STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylB_5Xylulose kinase; Belongs to the FGGY kinase family. (508 aa)    
Predicted Functional Partners:
dhaK_4
PTS-dependent dihydroxyacetone kinase%2C dihydroxyacetone-binding subunit dhaK.
  
    0.759
dhaL_4
PTS-dependent dihydroxyacetone kinase%2C ADP-binding subunit dhaL.
  
    0.750
ulaE_3
L-ribulose-5-phosphate 3-epimerase ulaE.
  
 
  0.740
mtnB_2
Methylthioribulose-1-phosphate dehydratase.
  
 
 0.689
rhaA
L-rhamnose isomerase; Belongs to the rhamnose isomerase family.
  
 
 0.665
xylB_4
Xylulose kinase; Belongs to the FGGY kinase family.
 
    
0.656
rbsC_8
Ribose transport system permease protein rbsC; Belongs to the binding-protein-dependent transport system permease family.
  
    0.616
ulaF
L-ribulose-5-phosphate 4-epimerase UlaF.
  
 
 0.567
sgbE
L-ribulose-5-phosphate 4-epimerase SgbE.
 
 
 0.567
rpiB_1
Ribose-5-phosphate isomerase B.
    
 0.562
Your Current Organism:
Anaerotruncus colihominis
NCBI taxonomy Id: 169435
Other names: A. colihominis, Anaerotruncus colihominis Lawson et al. 2004, CCUG 45055, CIP 107754, DSM 17241, JCM 15631, Ruminococcus sp. 14565, WAL 14565
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