STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
selAL-seryl-tRNA(Sec) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis. (467 aa)    
Predicted Functional Partners:
selD
Selenide%2C water dikinase; Synthesizes selenophosphate from selenide and ATP.
 
  
 0.992
selB
SelB translation factor.
  
 0.989
serS
Serine--tRNA ligase.
     
 0.903
csd_2
Probable cysteine desulfurase.
 
   
 0.831
yedF
Selenium metabolism protein YedF; Belongs to the sulfur carrier protein TusA family.
 
  
 0.768
CUP90337.1
Predicted transporter component.
 
  
 0.722
CUP28804.1
Fructoselysine 6-kinase.
 
 
  0.689
CUP90302.1
Selenium metabolism protein YedF.
 
  
 0.687
ydjH_1
Uncharacterized sugar kinase ydjH.
  
 
  0.636
ydjH_2
Uncharacterized sugar kinase ydjH.
  
 
  0.636
Your Current Organism:
Anaerotruncus colihominis
NCBI taxonomy Id: 169435
Other names: A. colihominis, Anaerotruncus colihominis Lawson et al. 2004, CCUG 45055, CIP 107754, DSM 17241, JCM 15631, Ruminococcus sp. 14565, WAL 14565
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.