STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUP93665.1Gamma-D-glutamyl-L-diamino acid endopeptidase 1. (300 aa)    
Predicted Functional Partners:
era
Bex protein; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
   
 
  0.601
cwlJ
Cell wall hydrolase CwlJ.
  
     0.595
CUP68240.1
Serine protease inhibitor; Belongs to the serpin family.
  
  
 0.559
nudF
ADP-ribose pyrophosphatase.
       0.554
CUP65982.1
MG2 domain.
    
 0.505
CUQ25663.1
MG2 domain.
    
 0.505
CUP56504.1
Stage III sporulation protein AG.
  
     0.476
CUP95240.1
Sulfite exporter TauE/SafE.
  
     0.460
rpsE
30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
    
  0.440
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
      0.439
Your Current Organism:
Anaerotruncus colihominis
NCBI taxonomy Id: 169435
Other names: A. colihominis, Anaerotruncus colihominis Lawson et al. 2004, CCUG 45055, CIP 107754, DSM 17241, JCM 15631, Ruminococcus sp. 14565, WAL 14565
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