STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
degA_3Degradation activator. (345 aa)    
Predicted Functional Partners:
galR
Galactose operon repressor.
  
 
  0.791
galS
Mgl repressor and galactose ultrainduction factor.
  
 
  0.788
cytR
HTH-type transcriptional repressor CytR.
  
     0.775
ccpA_7
Glucose-resistance amylase regulator.
  
     0.770
ptsG
EIICBA-Glc.
  
 
 0.769
ccpA_4
Catabolite control protein.
  
 
  0.705
ulaE_4
L-ribulose-5-phosphate 3-epimerase ulaE.
       0.511
araR
Arabinose metabolism transcriptional repressor.
  
     0.469
pyk_1
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
 
 0.457
lyx_2
L-xylulose/3-keto-L-gulonate kinase; Belongs to the FGGY kinase family.
   
   0.411
Your Current Organism:
Anaerotruncus colihominis
NCBI taxonomy Id: 169435
Other names: A. colihominis, Anaerotruncus colihominis Lawson et al. 2004, CCUG 45055, CIP 107754, DSM 17241, JCM 15631, Ruminococcus sp. 14565, WAL 14565
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.