STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycjS_2Uncharacterized oxidoreductase ycjS. (355 aa)    
Predicted Functional Partners:
arnB
UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase.
  
 
 0.851
tuaD
UDP-glucose 6-dehydrogenase tuaD.
 
 
 0.799
preA_2
NAD-dependent dihydropyrimidine dehydrogenase subunit PreA.
     
 0.781
mviM
Virulence factor mviM homolog.
  
     0.771
nagB_1
Glucosamine-6-phosphate deaminase 1.
  
 
  0.766
crnA_2
Creatinine amidohydrolase.
  
    0.764
ydjH_3
Uncharacterized sugar kinase ydjH.
  
 
  0.744
CUP58179.1
Fructoselysine 3-epimerase.
  
 
  0.717
allD_2
Ureidoglycolate dehydrogenase; Belongs to the LDH2/MDH2 oxidoreductase family.
       0.709
CUP57662.1
Fructoselysine 3-epimerase.
 
 
 0.708
Your Current Organism:
Anaerotruncus colihominis
NCBI taxonomy Id: 169435
Other names: A. colihominis, Anaerotruncus colihominis Lawson et al. 2004, CCUG 45055, CIP 107754, DSM 17241, JCM 15631, Ruminococcus sp. 14565, WAL 14565
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.