STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUQ13118.1Protein of uncharacterised function (DUF3847). (98 aa)    
Predicted Functional Partners:
mobA_3
DNA strand transferase.
 
     0.913
CUQ13206.1
Recombinase.
 
     0.801
CUQ13071.1
DNA repair protein RadA.
 
     0.769
CUQ13158.1
RNA polymerase sigma factor.
 
     0.699
CUQ12931.1
DNA primase.
 
     0.594
CUQ13135.1
Uncharacterised protein.
       0.556
mobA_1
DNA strand transferase.
 
     0.532
CUP91243.1
Uncharacterised protein.
  
     0.529
CUP71287.1
Helix-turn-helix.
  
     0.462
polA_1
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
  
    0.454
Your Current Organism:
Anaerotruncus colihominis
NCBI taxonomy Id: 169435
Other names: A. colihominis, Anaerotruncus colihominis Lawson et al. 2004, CCUG 45055, CIP 107754, DSM 17241, JCM 15631, Ruminococcus sp. 14565, WAL 14565
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.