STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mobA_5DNA strand transferase. (526 aa)    
Predicted Functional Partners:
dnaG_3
DNA primase.
 
 
  0.804
CUQ24548.1
Predicted P-loop ATPase and inactivated derivatives.
 
     0.783
CUQ24686.1
Uncharacterised protein.
 
     0.752
CUQ27126.1
Uncharacterised protein.
  
     0.718
CUP76691.1
Uncharacterised protein.
  
     0.705
CUQ26796.1
Uncharacterised protein.
  
     0.705
CUQ27962.1
Helix-turn-helix domain.
  
    0.681
CUQ12639.1
Uncharacterized protein conserved in bacteria.
  
    0.675
CUP76519.1
Uncharacterised protein.
  
     0.559
CUQ26641.1
Uncharacterised protein.
  
     0.559
Your Current Organism:
Anaerotruncus colihominis
NCBI taxonomy Id: 169435
Other names: A. colihominis, Anaerotruncus colihominis Lawson et al. 2004, CCUG 45055, CIP 107754, DSM 17241, JCM 15631, Ruminococcus sp. 14565, WAL 14565
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.