STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rsrIM_2Modification methylase RsrI. (188 aa)    
Predicted Functional Partners:
CUQ27605.1
Transcriptional activator%2C adenine-specific DNA methyltransferase.
 
     0.827
CUQ27542.1
PrgI family protein.
       0.785
CUQ27052.1
Uncharacterised protein.
 
     0.741
CUQ25372.1
Uncharacterised protein.
 
     0.646
CUQ26994.1
Uncharacterised protein.
 
     0.639
dpnM_2
Modification methylase DpnIIA.
 
  
 0.486
CUQ20384.1
Uncharacterised protein.
  
    0.439
CUP99125.1
RNA polymerase sigma factor%2C sigma-70 family.
  
 
   0.434
CUQ27891.1
Uncharacterised protein.
  
    0.432
CUQ25739.1
RNA polymerase sigma factor.
  
 
   0.425
Your Current Organism:
Anaerotruncus colihominis
NCBI taxonomy Id: 169435
Other names: A. colihominis, Anaerotruncus colihominis Lawson et al. 2004, CCUG 45055, CIP 107754, DSM 17241, JCM 15631, Ruminococcus sp. 14565, WAL 14565
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.