STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKV88020.1Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (320 aa)    
Predicted Functional Partners:
AKV84970.1
Phenylacetic acid degradation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.618
AKV88053.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.592
AKV87232.1
Heavy metal-binding domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.592
AKV87600.1
DNA repair exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.586
AKV86615.1
Carboxylesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.583
AKV86616.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.577
AKV88019.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.564
AKV85923.1
Ubiquinol-cytochrome c reductase cytochrome b subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.562
AKV85256.1
Arylsulfatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.561
AKV85264.1
Arylsulfatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.561
Your Current Organism:
Microbacterium sp. CGR1
NCBI taxonomy Id: 1696072
Other names: M. sp. CGR1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.