STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yciB_1Putative L,D-transpeptidase YciB precursor. (394 aa)    
Predicted Functional Partners:
AQR98284.1
Hypothetical protein.
       0.561
PilO
Hypothetical protein.
  
     0.488
AQS00546.1
Hypothetical protein.
 
     0.467
AQS02053.1
Hypothetical protein.
  
     0.464
AQR99705.1
Bacterial SH3 domain protein.
 
   
 0.455
lacA_2
Galactoside O-acetyltransferase.
      
 0.420
misCA
Membrane protein insertase MisCA precursor.
      
 0.420
phoR_1
Alkaline phosphatase synthesis sensor protein PhoR.
 
     0.408
AQR99647.1
Putative amidase domain protein.
  
     0.400
AQS00934.1
HIRAN domain protein.
  
     0.400
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.