STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpfG_1Cyclic di-GMP phosphodiesterase response regulator RpfG. (369 aa)    
Predicted Functional Partners:
pleD_4
Response regulator PleD.
 
 
 0.838
cph2_2
Phytochrome-like protein cph2.
 
 
 0.775
cph2_1
Phytochrome-like protein cph2.
   
 0.753
pleD_2
Response regulator PleD.
 
 
 0.750
ycdT_2
Putative diguanylate cyclase YcdT.
 
 0.744
yegE
Putative diguanylate cyclase YegE.
 
 0.729
ycdT_1
Putative diguanylate cyclase YcdT.
  
 
 0.706
cph2_3
Phytochrome-like protein cph2.
 
   
 0.672
pleD_3
Response regulator PleD.
 
 0.660
pleD_1
Response regulator PleD.
 
 0.656
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
Server load: low (8%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.