STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR98307.1Anaerobic benzoate catabolism transcriptional regulator. (231 aa)    
Predicted Functional Partners:
AQR98306.1
Hypothetical protein.
       0.849
ppiA
Peptidyl-prolyl cis-trans isomerase A precursor; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
       0.776
AQR98559.1
Putative RNA polymerase sigma factor SigI.
  
   
 0.729
AQS02169.1
Anaerobic benzoate catabolism transcriptional regulator.
 
   
 0.724
AQS02168.1
Helix-turn-helix domain protein.
  
     0.717
AQR99416.1
Tetratricopeptide repeat protein.
  
   
 0.710
cotI_2
Spore coat protein I.
  
     0.689
cotI_1
Spore coat protein I.
  
     0.684
cotI_4
Spore coat protein I.
  
     0.677
AQS02467.1
Hypothetical protein.
  
  
 0.664
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.