STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR98310.1Hypothetical protein. (353 aa)    
Predicted Functional Partners:
YtxC
YtxC-like family protein.
 
     0.719
AQS00870.1
Stage III sporulation protein SpoAB.
  
    0.716
spoIIIAE
Stage III sporulation protein AE precursor.
  
    0.681
mtaB_1
Threonylcarbamoyladenosine tRNA methylthiotransferase MtaB.
       0.632
PflA
Radical SAM superfamily protein.
       0.620
spoVB_2
Stage V sporulation protein B.
  
    0.600
spoIIM
Stage II sporulation protein M.
  
    0.577
lon2_2
Lon protease 2.
  
     0.573
YqfD
Putative stage IV sporulation protein YqfD.
  
     0.566
yabG
Sporulation-specific protease YabG.
  
     0.556
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.