STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR98313.1BFD-like [2Fe-2S] binding domain protein. (70 aa)    
Predicted Functional Partners:
mmgC_1
acyl-CoA dehydrogenase.
  
 
 0.788
hrb
High molecular weight rubredoxin.
  
 
 0.755
rubR2
Rubredoxin-2.
  
 
 0.734
hmp
Flavohemoprotein.
  
  
 0.649
AQR98901.1
CYTH domain protein.
 
     0.605
nasF
uroporphyrinogen-III C-methyltransferase.
  
  
 0.602
AQR98307.1
Anaerobic benzoate catabolism transcriptional regulator.
  
     0.584
AQS02245.1
Hypothetical protein.
  
     0.526
AQR98278.1
Hypothetical protein.
 
    0.502
AQR98673.1
Endodeoxyribonuclease RusA.
  
     0.495
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.