Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
phoR_2Alkaline phosphatase synthesis sensor protein PhoR. (432 aa)    
Predicted Functional Partners:
arlR_1
Response regulator ArlR.
 
 0.996
barA_1
Signal transduction histidine-protein kinase BarA.
  
 
 0.828
barA_2
Signal transduction histidine-protein kinase BarA.
 
 
0.826
walR_2
Transcriptional regulatory protein WalR.
 
 
 0.813
phoP_1
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP.
 
 
 0.805
divL
Sensor protein DivL.
  
 
 
 0.800
CheY1
Chemotaxis protein CheY homolog.
  
 
 0.797
phoP_2
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP.
 
 
 0.793
AQS00084.1
Putative histidine kinase sensor domain protein.
  
 
 0.792
phoP_3
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP.
 
 
 0.785
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.