STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ubiBPutative protein kinase UbiB. (539 aa)    
Predicted Functional Partners:
AQR98326.1
Poly(hydroxyalcanoate) granule associated protein.
 
     0.870
AQS02313.1
Glycosyl transferases group 1.
  
 
 0.593
lgrD_2
Linear gramicidin synthase subunit D.
  
 
 0.512
ubiE_5
Phthiotriol/phenolphthiotriol dimycocerosates methyltransferase.
   
 
 0.511
AQR99718.1
Glycine/sarcosine N-methyltransferase.
   
 
 0.511
AQR99998.1
23S rRNA methyltransferase A.
   
 
 0.511
tylM1
dTDP-3-amino-3,6-dideoxy-alpha-D-glucopyranose N,N-dimethyltransferase.
   
 
 0.511
AQS01610.1
Putative methyltransferase.
   
 
 0.511
hisI
Histidine biosynthesis bifunctional protein HisIE; Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP.
       0.442
recJ_2
single-stranded-DNA-specific exonuclease RecJ.
      0.442
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.