STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spoVB_1Stage V sporulation protein B. (512 aa)    
Predicted Functional Partners:
mazG
Nucleoside triphosphate pyrophosphohydrolase.
  
    0.823
spoVT_1
Stage V sporulation protein T.
 
   
 0.757
AQR99514.1
Hypothetical protein; Belongs to the UPF0297 family.
  
     0.697
AQR98377.1
Ribosome-associated heat shock protein Hsp15.
  
    0.686
YabQ
Spore cortex protein YabQ.
 
  
 0.670
trmK
tRNA (adenine(22)-N(1))-methyltransferase.
  
     0.648
hup
DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.
       0.622
yabP
Spore protein YabP.
  
  
 0.590
sigH
RNA polymerase sigma-H factor; Belongs to the sigma-70 factor family.
  
    0.584
cggR
Central glycolytic protein regulator.
  
    0.503
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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