STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YaaTHypothetical protein; PSP1 C-terminal conserved region. (301 aa)    
Predicted Functional Partners:
dnaX_1
DNA polymerase III subunit tau.
  
   0.876
AQR98399.1
Hypothetical protein.
  
    0.869
rny_4
Ribonuclease Y; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family.
 
  
 0.869
AQR98402.1
Hypothetical protein.
       0.835
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
  
    0.707
AQR98403.1
Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
       0.666
fliE
Flagellar hook-basal body complex protein FliE.
   
   0.610
AQS02074.1
Flagellar basal body rod modification protein; Required for flagellar hook formation. May act as a scaffolding protein.
    
   0.597
cheR_1
Chemotaxis protein methyltransferase.
    
   0.573
cheR_2
Chemotaxis protein methyltransferase.
    
   0.573
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.