Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AQR98402.1Hypothetical protein. (66 aa)    
Predicted Functional Partners:
dnaX_1
DNA polymerase III subunit tau.
       0.805
YaaT
Hypothetical protein; PSP1 C-terminal conserved region.
       0.805
AQR98399.1
Hypothetical protein.
  
    0.787
pacS
Putative copper-transporting ATPase PacS.
  
 
 0.636
AQS00711.1
Hypothetical protein.
  
 
 0.636
cadA_1
Cadmium, zinc and cobalt-transporting ATPase.
  
 
 0.631
cadA_2
Cadmium, zinc and cobalt-transporting ATPase.
  
 
 0.631
copA_3
Copper-exporting P-type ATPase A.
  
 
 0.631
copA_4
Copper-exporting P-type ATPase A.
  
 
 0.631
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
       0.629
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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