Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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[Homology]
Score
AQR98403.1Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. (56 aa)    
Predicted Functional Partners:
hndD
NADP-reducing hydrogenase subunit HndC.
  
 0.959
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.944
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.944
puuB
Gamma-glutamylputrescine oxidoreductase.
  
 
 0.846
AQS00362.1
Iron hydrogenase 1.
  
 
 0.834
urdA
Urocanate reductase precursor.
  
 
 0.740
mmgC_1
acyl-CoA dehydrogenase.
  
 0.730
frdA
Fumarate reductase flavoprotein subunit.
  
 
 0.730
AQS01921.1
Hypothetical protein.
  
 
 0.720
ptrA_1
Protease 3 precursor; Belongs to the peptidase M16 family.
  
 
 0.676
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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