Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQR98413.1Hypothetical protein. (132 aa)    
Predicted Functional Partners:
YtxC
YtxC-like family protein.
  
     0.675
AQS02444.1
Hypothetical protein.
  
     0.660
AQS02247.1
Hypothetical protein.
  
    0.653
YacL
Putative PIN and TRAM-domain containing protein precursor.
       0.569
ycgR
Flagellar brake protein YcgR.
  
     0.527
AQR99288.1
Nascent polypeptide-associated complex protein.
  
     0.525
tarI
Putative ribitol-5-phosphate cytidylyltransferase; Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D- erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP).
       0.518
AQS00418.1
Membrane protein of unknown function.
  
     0.509
AQR98819.1
Hypothetical protein; S-layer homology domain.
  
     0.495
abrB_2
Transition state regulatory protein AbrB.
 
    0.448
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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