Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AQR98485.1Tetratricopeptide repeat protein. (415 aa)    
Predicted Functional Partners:
AQS02169.1
Anaerobic benzoate catabolism transcriptional regulator.
 
 
 
 0.804
bepA
Beta-barrel assembly-enhancing protease.
 
 
 0.800
AQR99416.1
Tetratricopeptide repeat protein.
 
 
 0.787
AQS02168.1
Helix-turn-helix domain protein.
  
 
   0.787
AQR98334.1
Hypothetical protein.
 
  
 0.779
AQR98559.1
Putative RNA polymerase sigma factor SigI.
 
     0.778
AQS02075.1
Flagellar hook-length control protein FliK.
  
     0.772
AQR99421.1
O-antigen ligase.
 
     0.767
III1
DNA polymerase III subunit epsilon.
 
     0.767
AQS02241.1
Hypothetical protein.
  
     0.766
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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