Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AQR98538.1ABC-2 family transporter protein. (413 aa)    
Predicted Functional Partners:
lptB_1
Lipopolysaccharide export system ATP-binding protein LptB.
 
  
 0.978
murG_1
UDP-N-acetylglucosamine transferase.
 
     0.782
fabG_1
3-oxoacyl-[acyl-carrier-protein] reductase FabG.
   
   0.768
AQR98540.1
B12 binding domain protein.
       0.676
AQR98536.1
Peptidase family M50.
     
 0.673
AQR98541.1
Hypothetical protein.
       0.666
ppsE
Plipastatin synthase subunit E.
   
   0.574
argD_1
Acetylornithine aminotransferase.
       0.564
AQR98534.1
Hypothetical protein.
       0.545
ubiE_1
Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE.
       0.444
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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