STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fabG_13-oxoacyl-[acyl-carrier-protein] reductase FabG. (253 aa)    
Predicted Functional Partners:
AQR98538.1
ABC-2 family transporter protein.
   
   0.768
mbtB_2
Phenyloxazoline synthase MbtB.
  
 
 0.765
lptB_1
Lipopolysaccharide export system ATP-binding protein LptB.
 
     0.755
grsB_2
Gramicidin S synthase 2.
  
 
 0.746
lgrD_2
Linear gramicidin synthase subunit D.
  
 
 0.741
murG_1
UDP-N-acetylglucosamine transferase.
 
  
 0.726
AQR98536.1
Peptidase family M50.
 
   
 0.703
tycC
Tyrocidine synthase 3.
  
 
 0.703
srfAA
Surfactin synthase subunit 1.
  
 
 0.703
mmgC_1
acyl-CoA dehydrogenase.
  
 0.702
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.