STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR98540.1B12 binding domain protein. (434 aa)    
Predicted Functional Partners:
murG_1
UDP-N-acetylglucosamine transferase.
 
  
 0.876
ssb
Single-stranded DNA-binding protein.
   
    0.792
AQR98541.1
Hypothetical protein.
       0.752
lptB_1
Lipopolysaccharide export system ATP-binding protein LptB.
 
     0.687
fabG_1
3-oxoacyl-[acyl-carrier-protein] reductase FabG.
       0.686
ppsE
Plipastatin synthase subunit E.
 
     0.681
AQR98538.1
ABC-2 family transporter protein.
       0.676
AQR98536.1
Peptidase family M50.
 
     0.655
CcpM
Anaerobic sulfatase-maturating enzyme.
 
  
 0.516
ubiE_1
Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE.
 
     0.510
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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