STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
acrB_1acryloyl-CoA reductase electron transfer subunit gamma. (262 aa)    
Predicted Functional Partners:
acrA_1
acryloyl-CoA reductase electron transfer subunit beta.
 0.998
GlcD1
Putative FAD-linked oxidoreductase.
 
 0.992
mmgC_1
acyl-CoA dehydrogenase.
 
 0.979
GlcD2
Putative FAD-linked oxidoreductase.
 
 0.979
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
  
 0.977
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
  
 0.977
acrA_2
acryloyl-CoA reductase electron transfer subunit beta; May play a role in a redox process; Belongs to the ETF alpha-subunit/FixB family.
 0.971
acrA_4
acryloyl-CoA reductase electron transfer subunit beta.
 0.968
acrA_3
acryloyl-CoA reductase electron transfer subunit beta.
 0.958
ldh
L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family.
   
 0.935
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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