STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GlcD1Putative FAD-linked oxidoreductase. (467 aa)    
Predicted Functional Partners:
acrA_1
acryloyl-CoA reductase electron transfer subunit beta.
 
 
 0.963
acrB_1
acryloyl-CoA reductase electron transfer subunit gamma.
 
 
 0.953
hprA
Glycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
   
 0.927
AQS00094.1
Putative 2-hydroxyacid dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
   
 0.927
AQR99660.1
5'-nucleotidase.
    
 0.917
dgoA
2-dehydro-3-deoxy-6-phosphogalactonate aldolase.
   
 
 0.914
GlcD2
Putative FAD-linked oxidoreductase.
  
  
0.908
mmgC_1
acyl-CoA dehydrogenase.
  
 
 0.872
AQS01763.1
Hypothetical protein.
 
  
 0.786
acrB_3
acryloyl-CoA reductase electron transfer subunit gamma.
 
 
 0.777
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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