STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
GlcD1Putative FAD-linked oxidoreductase. (467 aa)    
Predicted Functional Partners:
acrA_1
acryloyl-CoA reductase electron transfer subunit beta.
 
 0.995
acrB_1
acryloyl-CoA reductase electron transfer subunit gamma.
 
 0.992
AQS00691.1
Hypothetical protein.
 
  
 0.959
AQS00332.1
Hypothetical protein.
 
  
 0.940
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
   
 0.935
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
   
 0.935
pyk_1
Pyruvate kinase; Belongs to the pyruvate kinase family.
   
 0.921
pyk_2
Pyruvate kinase; Belongs to the pyruvate kinase family.
   
 0.921
cfiB_1
2-oxoglutarate carboxylase small subunit; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.
  
 
 0.920
ppdK
Pyruvate, phosphate dikinase; Belongs to the PEP-utilizing enzyme family.
    
 0.916
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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