Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AQR98592.1Iron hydrogenase 1. (495 aa)    
Predicted Functional Partners:
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.876
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.876
hndD
NADP-reducing hydrogenase subunit HndC.
 
 
 
0.841
bioB_1
Biotin synthase.
 
  
 0.667
mnmE_1
tRNA modification GTPase MnmE.
 
   
 0.666
bioB_2
Biotin synthase.
 
  
 0.660
rsxB_3
Electron transport complex subunit RsxB.
  
 
 0.633
AQS00362.1
Iron hydrogenase 1.
 
 
 
0.607
narB
Nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
   
 
 0.599
AQR98403.1
Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
 
 
 0.577
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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