Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AQR98626.1Hypothetical protein; N-terminal phage replisome organiser (Phage_rep_org_N). (385 aa)    
Predicted Functional Partners:
AQR98625.1
Helix-turn-helix domain protein.
       0.608
dnaA_2
Chromosomal replication initiator protein DnaA.
  
  
 0.598
AQR98624.1
Helix-turn-helix domain protein.
     
 0.586
AQR99421.1
O-antigen ligase.
  
     0.496
XtmA
Terminase small subunit.
 
  
 0.495
AQS02325.1
Hypothetical protein.
  
     0.493
AQS00044.1
Transposase DDE domain protein.
  
     0.461
AQS00659.1
Transposase DDE domain protein.
  
     0.461
AQS01661.1
Transposase DDE domain protein.
  
     0.461
lspA
Lipoprotein signal peptidase.
  
     0.460
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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