Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AQR98673.1Endodeoxyribonuclease RusA. (228 aa)    
Predicted Functional Partners:
AQS02168.1
Helix-turn-helix domain protein.
  
   
 0.771
AQR99416.1
Tetratricopeptide repeat protein.
  
     0.766
erpA
Iron-sulfur cluster insertion protein ErpA.
  
     0.765
secE
Protein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.763
AQR98901.1
CYTH domain protein.
  
     0.754
AQS02172.1
Hypothetical protein.
  
     0.754
AQS02169.1
Anaerobic benzoate catabolism transcriptional regulator.
  
   
 0.752
AQR98278.1
Hypothetical protein.
  
     0.745
AQS02467.1
Hypothetical protein.
  
     0.722
AQR98559.1
Putative RNA polymerase sigma factor SigI.
 
     0.716
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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