Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cotI_2Spore coat protein I. (345 aa)    
Predicted Functional Partners:
cotI_1
Spore coat protein I.
 
   
0.940
mfpsA
Mannosylfructose-phosphate synthase.
 
  
 0.872
AQR98681.1
Hypothetical protein.
  
    0.841
AQR98689.1
LysM domain protein.
 
   
 0.709
AQR98334.1
Hypothetical protein.
  
  
 0.701
AQR98307.1
Anaerobic benzoate catabolism transcriptional regulator.
  
     0.689
YtxC
YtxC-like family protein.
  
     0.643
AQS02169.1
Anaerobic benzoate catabolism transcriptional regulator.
  
     0.636
aprX
Serine protease AprX.
  
     0.634
AQS00921.1
Small, acid-soluble spore protein, alpha/beta type.
  
     0.633
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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