STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mshA_1D-inositol 3-phosphate glycosyltransferase. (373 aa)    
Predicted Functional Partners:
cotI_3
Spore coat protein I.
 
  
 0.865
cotI_1
Spore coat protein I.
 
  
 0.633
algA_1
Alginate biosynthesis protein AlgA.
 
  
 0.627
cotI_4
Spore coat protein I.
 
  
 0.618
algA_2
Alginate biosynthesis protein AlgA.
 
  
 0.593
glgB
1,4-alpha-glucan branching enzyme GlgB; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.583
cotI_2
Spore coat protein I.
 
  
 0.582
wcaJ_2
UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase.
 
  
 0.580
tuaC
Putative teichuronic acid biosynthesis glycosyltransferase TuaC.
  
     0.566
rffG
dTDP-glucose 4,6-dehydratase 2.
 
  
 0.565
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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