STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cotI_3Spore coat protein I. (332 aa)    
Predicted Functional Partners:
mshA_1
D-inositol 3-phosphate glycosyltransferase.
 
  
 0.865
yabG
Sporulation-specific protease YabG.
 
  
 0.728
AQS00921.1
Small, acid-soluble spore protein, alpha/beta type.
  
     0.701
AQS02263.1
Divergent AAA domain protein.
  
     0.699
AQR98689.1
LysM domain protein.
 
   
 0.698
YtxC
YtxC-like family protein.
  
     0.660
AQR98307.1
Anaerobic benzoate catabolism transcriptional regulator.
  
     0.658
YhbH
Stress response UPF0229 protein YhbH; Belongs to the UPF0229 family.
  
  
 0.640
ssb
Single-stranded DNA-binding protein.
  
    0.631
AQR98334.1
Hypothetical protein.
  
  
 0.606
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.