STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR98689.1LysM domain protein. (520 aa)    
Predicted Functional Partners:
AQR98334.1
Hypothetical protein.
 
   
 0.772
SpoIIGA
Sporulation factor SpoIIGA; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
  
    0.751
AQS02630.1
MazG-like family protein.
  
     0.741
AQS00869.1
Stage III sporulation protein AC/AD protein family protein.
  
     0.737
ssb
Single-stranded DNA-binding protein.
  
   
 0.737
YqfD
Putative stage IV sporulation protein YqfD.
  
     0.736
aprX
Serine protease AprX.
 
 
 
 0.735
AQS00865.1
Hypothetical protein.
  
    0.713
cotI_2
Spore coat protein I.
 
   
 0.711
cotI_3
Spore coat protein I.
 
   
 0.698
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.