STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR98739.1CAAX amino terminal protease self- immunity. (281 aa)    
Predicted Functional Partners:
AQR98832.1
Hypothetical protein.
  
     0.623
lytB_3
Putative endo-beta-N-acetylglucosaminidase precursor.
  
   0.603
pipB2_2
Secreted effector protein pipB2.
 
     0.596
AQS02315.1
Hypothetical protein.
    
   0.589
phoR_3
Alkaline phosphatase synthesis sensor protein PhoR.
       0.570
AQS00578.1
Hypothetical protein.
  
    0.561
phoP_1
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP.
     
 0.543
AQR99705.1
Bacterial SH3 domain protein.
 
    0.515
AQS01576.1
Ferredoxin.
 
  
 0.510
AQS00668.1
Hypothetical protein.
  
     0.505
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.